Genomics and Bioinformatics Workshop 2015

Intro

It is our pleasure to announce the fourth workshop organized by the EU FP7 project InnoMol.

The Genomics & Bioinformatics Workshop will take place from November 16-18, 2015 at the Ruđer Bošković Institute, Zagreb, Croatia.

The aim of this workshop is to bring together experts in Genomics & Bioinformatics highlighting new approaches in basic and clinical research including the use of new technology such as Next-Generation Sequencing.

There will be no registration fee for the attendees. The workshop is primarily intended for Postdoctoral Researchers and PhD students. Nevertheless, other participants are welcome. The official language of the Workshop is English.

We can accept up to 60 participants to follow the lectures. However, due to the limited lab space, we can accept a maximum of 12 participants for the hands-on session. Therefore, participants interested in attending the hands-on section are invited to write a motivation letter, describing their current research and the expected impact of the workshop participation for their future research and sent it to Dr Oliver Vugrek ( ovugrek@irb.hr). Participants for hands-on section will be selected by the Workshop Scientific Board.

Registration for the Genomics & Bioinformatics Workshop is open till October 23, 2015.

Workshop Presentations

Presentation list.

Gallery

Media Centre

Timeline

Day 1 (November 16, 2015)

Day 2 (November 17, 2015)

Day 3 (November 18, 2015)

9:00-10.00 Registration

10:00-11:15 Opening by Oliver Vugrek, Project Coordinator

Morning session (chair: M. Plohl)

10:15-11:05 Fernando Azorin Marin

11:05-11:55 Stephan Teglund

Morning session (chair: O. Vugrek)

10:15-11:05 Hubert Hackle

11:05-11:55 Emanuele Sasso

Morning session (chair: T. Šmuc)

9:00-9:50 Evdokiya Salamanova

9:50-10:15 Coffee/tea break

10:15-11:05 Danielle Nuzillard

11:05-12:00 Mercedes Arguello Casteleiro

Closing remarks

12.00-13.30 Lunch break

(with the compliments of the Organizing Committee)

12:00-13:30 Lunch break

(with the compliments of the Organizing Committee)

12:00-13:00 Lunch break

(with the compliments of the Organizing Committee)

Afternoon session (chair: Neda Slade)

13:30-14:20 Enrico De Smaele

14:20-15:10 Jean-Christophe Bourdon

Open discussion

Afternoon session (chair: T. Balog)

13:30-14:20Matthias Linke

14:20-15:10 Jorge Boucas

Open discussion

Hands-on workshop - overview

Abstracts

Stephan Teglund -

Suppressor of Fused is an Essential Repressor in the Hedgehog Signaling Pathway.docx 113.41 kB

Fernando Azorín-

Drosophila Epigenomics.pdf 47.55 kB
Danielle Nuzillard-

From Data Acquisition to Decision.pdf 46.19 kB
Charoentong P, Efremova M, Angelova M, Hackl H, Trajanoski Z-

Immune and molecular landscape in colorectal cancer.pdf 55.28 kB

Enrico De Smaele -

Hedgehog pathway, microRNAs and neural stem cells maintenance.pdf 46.44 kB
Mercedes Arguello Casteleiro, Julie Klein and Robert Stevens -

The Proteasix Ontology.pdf 60.87 kB

Evdokiya Salamanova, Alok Juneja, Anthony Wright, Lennart Nilsson -

Effects of change-of-function mutations on helical propensity in the intrinsically disordered τ1-core activation domain of the Glucocorticoid receptor..pdf 61.59 kB

Jorge Bouças-

Bioinformatics Business Services in 2015- culture, good practices, and structure.pdf 44.27 kB

Jean-Christophe Bourdon-

p53 isoforms combinatorics- is there a p53 code_.pdf 47.70 kB

Emanuele Sasso, Alfredo Nicosia, Claudia De Lorenzo, Nicola Zambrano -

High throughput screening of phage display libraries for production of fully human antibodies challenged to cells expressing native claudin-1.pdf 53.95 kB

Matthias Linke -

State-of-the-art epigenomics using NGS-based BiSulfite Amplicon Sequencing (BSAS) and targeted Allele-Specific RNAseq .docx 148.21 kB

Organizing Committee:

Tihomir Balog
Dragan Gamberger
Ivanka Jerić
Sonja Levanat
Sanja Tomić
Marijeta Kralj
Neda Slade

Committees

Workshop Scientific Committee:

Oliver Vugrek
Sonja Levanat
Tomislav Šmuc

Partners and Institutions

Fernando Azorin Marin
Molecular Biology Institute of Barcelona and Institute for Research in Biomedicine, Barcelona Science Park, Spain

Emanuele Sasso
Department of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, Naples, Italy

Stephan Teglund
Karolinska Center for Transgene Technologies, Karolinska Institute, Sweden

Jean-Christophe Bourdon
University of Dundee, College of Medicine, Ninewells Hospital, Centre for Oncology and Molecular Medicine, UK

Evdokiya Salamanova
Department of Biosciences and Nutrition, Karolinska Institute, Sweden

Jorge Bouças
Max Planck Institute for Biology of Ageing, Cologne, Germany

Matthias Linke
Johannes Gutenberg University Mainz, Institute of Human Genetics, Mainz, Germany

Enrico De Smaele
Laboratory of Molecular Oncology, Dept. of Molecular Medicine, University La Sapienza, Rome, Italy

Hubert Hackl
Section for Bioinformatics, Medical University Innsbruck, Austria

Mercedes Arguello Casteleiro
The University of Manchester, UK

Danielle Nuzillard
University of Reims - Champagne-Ardenne, University for Research in Science and Technology of Information and Communication, Reims Cedex 2, France

HANDS-ON demonstration

Whole-genome /Transcriptome sequencing
NGS library preparation using advanced approach.
Hands-on workshop manager: Oliver Vugrek

Registration

Registration for the Genomics & Bioinformatics Workshop is open till October 23, 2015.

Subitems

Genomics and Bioinformatics Workshop 2015

Intro